- R. D.~McDougall N.~Malaya, “The parallel c++ ſtatistical library for bayesian ınference: queſo,” in Handbook of uncertainty quantification, R. ~. Ghanem and H. D.~Higdon, Eds., Springer International Publishing, 2016.

[Bibtex]`@incollection{UQHANDBOOKSOFTWARE, author = "D.~McDougall, N.~Malaya, R.D.~Moser", title = "The Parallel C++ Statistical Library for Bayesian Inference: QUESO", editor = "R.~ Ghanem and D.~Higdon, H.~Owhadi", booktitle = "Handbook of Uncertainty Quantification", publisher = "Springer International Publishing", year = 2016, }`

- J. Sillero, J. Jiménez, {. D. }. Moser, and {. P. }. Malaya, “Direct simulation of a zero-pressure-gradient turbulent boundary layer up to $Re_\theta = 6650$,” Journal of physics: conference ſeries, vol. 318, iss. SECTION 2, 2011.

[Bibtex]`@article{DNSBL, title = "Direct simulation of a zero-pressure-gradient turbulent boundary layer up to $Re_\theta = 6650$", keywords = "Physics and Astronomy(all)", author = "Juan Sillero and Javier Jiménez and Moser, {Robert D.} and Malaya, {Nicholas P.}", year = "2011", doi = "10.1088/1742-6596/318/2/022023", volume = "318", number = "SECTION 2", journal = "Journal of Physics: Conference Series", issn = "1742-6588", }`

- M. M. E. M. K. B. N. . R. D. . G. . C. . K. . R. J. Graham M. Lee and A. Szalay, “A Web Services-accessible database of turbulent channel flow and its use for testing a new integral wall model for LES density and velocity statistics in variable density turbulent mixing.”

[Bibtex]`@article{DNSWEB, author = {J. Graham, M. Lee, N. Malaya, R.D. Moser, G. Eyink, C. Meneveau, K. Kanov, R. Burns & A. Szalay}, title = {A Web Services-accessible database of turbulent channel flow and its use for testing a new integral wall model for LES} Density and velocity statistics in variable density turbulent mixing}`

- M. Lee, R. Ulerich, N. Malaya, and R. D. Moser, “Experiences from leadership computing in ſimulations of turbulent fluid flows,” Computing in ſcience & engineering, vol. 16, iss. 5, 2014.

[Bibtex]`@article{cse_paper, author = "Lee, Myoungkyu and Ulerich, Rhys and Malaya, Nicholas and Moser, Robert D.", title = "Experiences from Leadership Computing in Simulations of Turbulent Fluid Flows", journal = "Computing in Science & Engineering", year = "2014", volume = "16", number = "5", eid = , pages = "24-31", url = "http://scitation.aip.org/content/aip/journal/cise/16/5/10.1109/MCSE.2014.51", doi = "http://dx.doi.org/10.1109/MCSE.2014.51" }`

- M. Lee, N. Malaya, and R. D. Moser, “Petascale direct numerical ſimulation of turbulent channel flow on up to 786k cores,” in Proceedings of the ınternational conference on high performance computing, networking, ſtorage and analysis, New York, NY, USA, 2013, p. 61:1–61:11.

[Bibtex]`@inproceedings{LeeSC13, author = {Lee, Myoungkyu and Malaya, Nicholas and Moser, Robert D.}, title = {Petascale Direct Numerical Simulation of Turbulent Channel Flow on Up to 786K Cores}, booktitle = {Proceedings of the International Conference on High Performance Computing, Networking, Storage and Analysis}, series = {SC '13}, year = {2013}, isbn = {978-1-4503-2378-9}, location = {Denver, Colorado}, pages = {61:1--61:11}, articleno = {61}, numpages = {11}, url = {http://doi.acm.org/10.1145/2503210.2503298}, doi = {10.1145/2503210.2503298}, acmid = {2503298}, publisher = {ACM}, address = {New York, NY, USA}, keywords = {MPIalltoall, data transpose, parallel FFT, petascale, turbulence}, }`

- T. A. Oliver, N. Malaya, R. Ulerich, and R. D. Moser, “Estimating uncertainties in statistics computed from direct numerical simulation,” Physics of fluids, vol. 26, iss. 3, p. -, 2014.

[Bibtex]`@article{DNSUQ, author = "Oliver, Todd A. and Malaya, Nicholas and Ulerich, Rhys and Moser, Robert D.", title = "Estimating uncertainties in statistics computed from direct numerical simulation", journal = "Physics of Fluids", year = "2014", volume = "26", number = "3", eid = 035101, pages = "-", url = "http://scitation.aip.org/content/aip/journal/pof2/26/3/10.1063/1.4866813", doi = "http://dx.doi.org/10.1063/1.4866813" }`

- R. Ulerich, K. C. Estacio-Hiroms, N. Malaya, and R. D. Moser, “A transient manufactured solution for the compressible Navier–-Stokes equations with a power law viscosity,” in 10th World Congress on Computational Mechanics, {S}ão {P}aulo, {B}razil, 2012.

[Bibtex]`@INPROCEEDINGS{Ulerich2012MMS, title={A transient manufactured solution for the compressible {N}avier–-{S}tokes equations with a power law viscosity}, author={Rhys Ulerich and Kemelli C. Estacio-Hiroms and Nicholas Malaya and Robert D. Moser}, booktitle={{10th World Congress on Computational Mechanics}}, address={{S}\~{a}o {P}aulo, {B}razil}, month={{J}uly}, year={2012} }`

- A. Munafò, M}. {bf Panesi, R. Jaffe, A. Bourdon, and E. T. Magin, “Mechanism reduction for rovibrational energy excitation and dissociation of molecular nitrogen in hypersonic flows,” in 42nd aıaa thermophysics conference, 2011.

[Bibtex]`@INPROCEEDINGS{munafo2011b, author = {Munaf\`o, A. and {\bf Panesi, M} and Jaffe, R. and Bourdon, A. and Magin, E. T.}, title = {Mechanism reduction for rovibrational energy excitation and dissociation of molecular nitrogen in hypersonic flows}, booktitle = {42nd AIAA Thermophysics Conference}, year = {2011}, number = {AIAA 2011-3623}, month = {27-30 June}, owner = {mpanesi}, timestamp = {2011.07.15} }`

- M}. {bf Panesi, K. Miki, E. Prudencio, and S. Prudhomme, “Calibration of rates parameters for multi-temperature models using bayesian formulation,” in Aıaa-2011-3138 42nd aıaa thermophysics conference, 2011c.

[Bibtex]`@INPROCEEDINGS{Panesi2011c, author = {{\bf Panesi, M} and Miki, K. and Prudencio, E. and Prudhomme, S.}, title = {Calibration of Rates Parameters for Multi-Temperature models using Bayesian Formulation}, booktitle = {AIAA-2011-3138 42nd AIAA Thermophysics Conference}, year = {2011c}, month = {June 27-30}, owner = {mpanesi}, timestamp = {2011.10.12} }`

- M. }. {bf Panesi, E. T. Magin, A. Munafò, A. Bourdon, R. L. Jaffe, and D. Schwenke, “Rovibrational internal energy excitation and dissociation of nitrogen in hypersonic flows,” in Center for turbulence research – proceedings of the ſummer program 2010, 2010.

[Bibtex]`@INPROCEEDINGS{PanesiCTR2010, author = {{\bf Panesi, M.} and Magin, E. T. and Munaf\`o, A. and Bourdon, A. and Jaffe, R. L. and Schwenke, D.}, title = {Rovibrational internal energy excitation and dissociation of nitrogen in hypersonic flows}, booktitle = {Center for Turbulence Research - Proceedings of the Summer Program 2010}, year = {2010}, owner = {mpanesi}, timestamp = {2010.11.14} }`

- M. }. {bf Panesi, E. T. Magin, and W. Huo, “Nonequilibrium ionization phenomena behind shock waves,” in 27th ınternational ſymposium on rarefied gas dynamics, 2010.

[Bibtex]`@INPROCEEDINGS{PanesiRGD2010, author = {{\bf Panesi, M.} and Magin, E. T. and Huo, W.}, title = {Nonequilibrium ionization phenomena behind shock waves}, booktitle = {27th International Symposium on Rarefied Gas Dynamics}, year = {2010}, owner = {mpanesi}, timestamp = {2010.11.14} }`

- M. }. {bf Panesi and W. M. Huo, “Non-equilibrium ionization phenomena behind shock waves,” in 42nd aıaa thermophysics conference 27 – 30 , honolulu, hawaii, June 2011.

[Bibtex]`@INPROCEEDINGS{Panesi2011b, author = {{\bf Panesi, M.} and Huo, W. M.}, title = {Non-equilibrium ionization phenomena behind shock waves}, booktitle = {42nd AIAA Thermophysics Conference 27 - 30 , Honolulu, Hawaii}, year = {June 2011}, owner = {mpanesi}, timestamp = {2011.09.18} }`

- M. W. Huo, M. }. {bf Panesi, and E. T. Magin, “Ionization phenomena behind ſhock waves,” Physical phenomena in ſhock waves – ſhock waves ſpringer, 2011.

[Bibtex]`@ARTICLE{Huo2011, author = {Huo, M. W. and {\bf Panesi, M.} and Magin, E. T.}, title = {Ionization Phenomena behind Shock Waves}, journal = {Physical Phenomena in Shock Waves - Shock waves Springer}, year = {2011}, owner = {mpanesi}, timestamp = {2011.10.12} }`

- T. E. Magin, M. }. {bf Panesi, A. Bourdon, R. Jaffe, and D. W. Schwenke, “Coarse-grain model for internal energy excitation and dissociation of molecular nitrogen,” Chemical physics, 2011.

[Bibtex]`@ARTICLE{Magin2011b, author = {Magin, T.E. and {\bf Panesi, M.} and Bourdon, A. and Jaffe, R. and Schwenke, D. W.}, title = {Coarse-grain model for internal energy excitation and dissociation of molecular nitrogen}, journal = {Chemical Physics}, year = {2011}, note = {Accepted for publication}, owner = {mpanesi}, timestamp = {2011.10.12} }`

- }. M. {bf Panesi, K. Miki, S. Prudhomme, and A. Brandis, “On the validation of a data reduction model with application to shock tube experiments,” Computer methods in applied mechanics and engineering, 2011.

[Bibtex]`@ARTICLE{Panesi2010, author = {{\bf Panesi,} M. and Miki, K. and Prudhomme, S. and Brandis, A.}, title = {On the validation of a data reduction model with application to shock tube experiments}, journal = {Computer Methods in Applied Mechanics and Engineering}, year = {2011}, note = {to appear}, owner = {mpanesi}, timestamp = {2010.11.20} }`

- A. Munafò, M. }. {bf Panesi, R. Jaffe, G. Colonna, A. Bourdon, and T. Magin, “Application of vibrational collisional models derived from qct calculations to nonequilibrium expanding nozzle flows,” Eur. phys. j. d, 2011.

[Bibtex]`@ARTICLE{Munafo2011, author = {Munaf\`o, A. and {\bf Panesi, M.} and Jaffe, R. and Colonna, G. and Bourdon, A. and Magin, T.}, title = {Application of vibrational collisional models derived from QCT calculations to nonequilibrium expanding nozzle flows}, journal = {Eur. Phys. J. D}, year = {2011}, note = {submitted for publication}, owner = {mpanesi}, timestamp = {2011.10.12} }`

- M. }. {bf Panesi, T. Magin, A. Bourdon, A. Bultel, and O. Chazot, “Study of electronically excited state populations of atoms and molecules predicted by means of a collisional-radiative model for the fire ıı flight experiment,” Journal of thermophysics and heat transfer, vol. 25, iss. 25, pp. 361-374, 2011.

[Bibtex]`@ARTICLE{Panesi2011, author = {{\bf Panesi, M.} and Magin, T. and Bourdon, A. and Bultel, A. and Chazot, O.}, title = {Study of electronically excited state populations of atoms and molecules predicted by means of a collisional-radiative model for the Fire II flight experiment}, journal = {Journal of Thermophysics and Heat Transfer}, year = {2011}, volume = {25}, pages = {361-374}, number = {25}, doi = {10.2514/1.50033}, owner = {mpanesi}, timestamp = {2010.11.14} }`

- R. L. Jaffe, D. W. Schwenke, M. }. {bf Panesi, and T. E. Magin, “Detailed theoretical study of collisional rotation-vibration energy transfer and dissociation in n2,” in 7th european aerothermodynamics ſymposium on ſpace vehicles – eſa, 2011.

[Bibtex]`@INPROCEEDINGS{Jaffe2011, author = {Jaffe, R.L. and Schwenke, D.W. and {\bf Panesi, M.} and Magin, T.E.}, title = {Detailed Theoretical study of collisional rotation-vibration energy transfer and dissociation in N2}, booktitle = {7th European Aerothermodynamics Symposium on Space Vehicles - ESA}, year = {2011}, owner = {mpanesi}, timestamp = {2011.10.12} }`

- T. S. P. S. D. Gabriel Terejanu Puneet Singla, “A decision-centric framework for density forecasting,” Journal of advances in ınformation fusion, vol. 5(2), pp. 73-87, 2010.

[Bibtex]`@ARTICLE{Terejanu_JAIF_2010, author = {Gabriel Terejanu, Puneet Singla, Tarunraj Singh, Peter D. Scott}, title = {A Decision-Centric Framework for Density Forecasting}, journal = {Journal of Advances in Information Fusion}, volume = {5(2)}, pages = {73-87}, year = {2010}, }`

- G. Terejanu, P. Singla, T. Singh, and P. D. Scott, “Adaptive gaussian ſum filter for nonlinear bayesian estimation,” Automatic control, ıeee transactions on, vol. 56, iss. 9, pp. 2151-2156, 2011.

[Bibtex]`@ARTICLE{Terejanu_TAC_2011, author={Terejanu, G. and Singla, P. and Singh, T. and Scott, P.D.}, journal={Automatic Control, IEEE Transactions on}, title={Adaptive Gaussian Sum Filter for Nonlinear Bayesian Estimation}, year={2011}, month={sept. }, volume={56}, number={9}, pages={2151 -2156}, keywords={Chapman-Kolmogorov equation;Fokker-Planck-Kolmogorov equation;Gaussian density kernels;Gaussian sum approximation;adaptive Gaussian sum filter;continuous time dynamical system;convex optimization problem;discrete time dynamical system;linear system theory;nonlinear Bayesian estimation;nonlinear filter;numerical simulation;state probability density function;Bayes methods;Gaussian processes;adaptive filters;approximation theory;continuous time filters;convex programming;discrete time filters;linear systems;nonlinear filters;probability;}, doi={10.1109/TAC.2011.2141550}, ISSN={0018-9286}, }`

- G. Terejanu, R. R. Upadhyay, and K. Miki, “Bayesian experimental design for the active nitridation of graphite by atomic nitrogen,” Experimental thermal and fluid ſcience, p. -, 2011.

[Bibtex]`@article{Terejanu_ETF_2011, title = "Bayesian experimental design for the active nitridation of graphite by atomic nitrogen", journal = "Experimental Thermal and Fluid Science", volume = "", number = "", pages = " - ", year = "2011", note = "accepted", issn = "0894-1777", doi = "10.1016/j.expthermflusci.2011.09.012", url = "http://www.sciencedirect.com/science/article/pii/S0894177711001944", author = "Gabriel Terejanu and Rochan R. Upadhyay and Kenji Miki", keywords = "Optimal experimental design", keywords = "Uncertainty quantification", keywords = "Bayesian analysis", keywords = "Information gain", keywords = "Mutual information" }`

- G. Terejanu, “An adaptive ſplit-merge ſcheme for uncertainty propagation using gaussian mixture models,” in The 49th aıaa aerospace ſciences meeting, orlando, florida, january, 2011.

[Bibtex]`@CONFERENCE{Terejanu_AIAA_2011, author = {Gabriel Terejanu}, title = {An Adaptive Split-Merge Scheme for Uncertainty Propagation using Gaussian Mixture Models}, booktitle = {The 49th AIAA Aerospace Sciences Meeting, Orlando, Florida, January}, year = {2011}, note = "AIAA-2011-890" }`

- C. S. Gabriel Terejanu Todd Oliver, “Application of predictive model ſelection to coupled models,” in International conference on modeling, ſimulation and control 2011 (ıcmſc’11), ſan francisco, uſa, 19-21 october, 2011.

[Bibtex]`@CONFERENCE{Terejanu_ICMSC_2011, author = {Gabriel Terejanu, Todd Oliver, Chris Simmons}, title = {Application of Predictive Model Selection to Coupled Models}, booktitle = {International Conference on Modeling, Simulation and Control 2011 (ICMSC'11), San Francisco, USA, 19-21 October}, year = {2011}, note = "arXiv:1107.0927" }`

- G. T. K. M. S. P. Rebecca Morrison Corey Bryant, “Optimal data ſplit methodology for model validation,” in International conference on modeling, ſimulation and control 2011 (ıcmſc’11), ſan francisco, uſa, 19-21 october, 2011.

[Bibtex]`@CONFERENCE{Morrison_ICMSC_2011, author = {Rebecca Morrison, Corey Bryant, Gabriel Terejanu, Kenji Miki, Serge Prudhomme}, title = {Optimal Data Split Methodology for Model Validation}, booktitle = {International Conference on Modeling, Simulation and Control 2011 (ICMSC'11), San Francisco, USA, 19-21 October}, year = {2011}, note = "arXiv:1108.6043" }`

- R. M. S. P. Gabriel Terejanu Corey Bryant, “An ınformation-theoretic approach to optimally calibrate approximate models,” in The 50th aıaa aerospace ſciences meeting, nashville, tennessee, 9-12 january, 2012.

[Bibtex]`@CONFERENCE{Terejanu_AIAA_2012_a, author = {Gabriel Terejanu, Corey Bryant, Rebecca Morrison, Serge Prudhomme}, title = {An Information-Theoretic Approach to Optimally Calibrate Approximate Models}, booktitle = {The 50th AIAA Aerospace Sciences Meeting, Nashville, Tennessee, 9-12 January}, year = {2012}, note = "accepted" }`

- T. O. S. P. Gabriel Terejanu Corey Bryant, “Two phase optimal experimental design process for predictive model assessment,” in 14th aıaa non-deterministic approaches conference, ſpecial ſession on uncertainty quantification in v&v, honolulu, hawaii, 23-26 april, 2012.

[Bibtex]`@CONFERENCE{Terejanu_AIAA_2012_b, author = {Gabriel Terejanu, Corey Bryant, Todd Oliver, Serge Prudhomme}, title = {Two Phase Optimal Experimental Design Process for Predictive Model Assessment}, booktitle = {14th AIAA Non-Deterministic Approaches Conference, Special Session on Uncertainty Quantification in V\&V, Honolulu, Hawaii, 23-26 April}, year = {2012}, note = "under review" }`

- M. C. N. . G. T. Oliver K. Estacio-Hiroms, “Manufactured ſolutions for the favre-averaged navier-ſtokes equations with eddy-viscosity turbulence models,” in The 50th aıaa aerospace ſciences meeting, nashville, tennessee, 9-12 january, 2012.

[Bibtex]`@CONFERENCE{Oliver_AIAA_2012, author = {T. Oliver, K. Estacio-Hiroms, N. Malaya, G. Carey}, title = {Manufactured Solutions for the Favre-Averaged Navier-Stokes Equations with Eddy-Viscosity Turbulence Models}, booktitle = {The 50th AIAA Aerospace Sciences Meeting, Nashville, Tennessee, 9-12 January}, year = {2012}, note = "accepted" }`

- V.~Garg and R.~Stogner, “Hierarchical ıncremental latin hypercube ſampling,” Submitted.

[Bibtex]`@article{HILHSPaper, author = {V.~Garg and R.~Stogner}, title = {Hierarchical Incremental Latin Hypercube Sampling}, journal = {submitted} }`

- N.~Malaya, K.~C.~Estacio-Hiroms, R.~H.~Stogner, K.~W.~Schulz, P.~T.~Bauman, and G.~F.~Carey, “MASA: a library for verification using manufactured and analytical ſolutions,” Engineering with computers.

[Bibtex]`@article{MASAPaper, author = {N.~Malaya and K.~C.~Estacio-Hiroms and R.~H.~Stogner and K.~W.~Schulz and P.~T.~Bauman and G.~F.~Carey}, title = {{MASA}: A Library for Verification Using Manufactured and Analytical Solutions}, journal = {Engineering with Computers}, publisher = {Springer London}, issn = {}, keyword = {Computer Science}, pages = {}, url = {}, note = {}, }`

- P.~T.~Bauman, R.~Stogner, G.~F.~Carey, K.~W.~Schulz, R.~Updadhyay, and A.~Maurente, “Loose-coupling algorithm for ſimulating hypersonic flows with radiation and ablation,” Aıaa journal of ſpacecraft and rockets, vol. 48, iss. 1, pp. 71-80, 2011.

[Bibtex]`@article{LooseHypersonic2011, author = {P.~T.~Bauman and R.~Stogner and G.~F.~Carey and K.~W.~Schulz and R.~Updadhyay and A.~Maurente}, title = {Loose-Coupling Algorithm for Simulating Hypersonic Flows with Radiation and Ablation}, journal = {AIAA Journal of Spacecraft and Rockets}, volume = 48, number = 1, pages = {71--80}, year = 2011 }`

- R.~H.~Stogner, B.~T.~Murray, and G.~F.~Carey, “Approximation of Cahn-Hilliard diffuse interface models using parallel adaptive mesh refinement and coarsening with $C^1$ elements,” Int. j. numer. meth. eng., in press, vol. 76, iss. 5, pp. 636-661, 2008.

[Bibtex]`@article{CHC1Paper, author = {R.~H.~Stogner and B.~T.~Murray and G.~F.~Carey}, title = {Approximation of {C}ahn-{H}illiard diffuse interface models using parallel adaptive mesh refinement and coarsening with {$C^1$} elements}, journal = {Int. J. Numer. Meth. Eng., in press}, volume = 76, number = 5, pages = "636--661", year = 2008 }`

- N. Malaya, K. W. Schulz, and R. Moser, “Petascale ı/o using hdf-5,” in Proceedings of the 2010 teragrid conference, New York, NY, USA, 2010, p. 11:1–11:4.

[Bibtex]`@inproceedings{Malaya:2010:PIU:1838574.1838585, author = {Malaya, Nicholas and Schulz, Karl W. and Moser, Robert}, title = {Petascale I/O using HDF-5}, booktitle = {Proceedings of the 2010 TeraGrid Conference}, series = {TG '10}, year = {2010}, isbn = {978-1-60558-818-6}, location = {Pittsburgh, Pennsylvania}, pages = {11:1--11:4}, articleno = {11}, numpages = {4}, url = {http://doi.acm.org/10.1145/1838574.1838585}, doi = {http://doi.acm.org/10.1145/1838574.1838585}, acmid = {1838585}, publisher = {ACM}, address = {New York, NY, USA}, keywords = {DNS, HPC, computational fluid dynamics, petascale I/O}, }`

- R. D. Moser, N. P. Malaya, H. Chang, P. S. Zandonade, P. Vedula, A. Bhattacharya, and A. Haselbacher, ““theoretically based optimal large-eddy simulation,” ” phys. fluids, vol. 21, pp. 105104-1, 2009.

[Bibtex]`@article{moser2009theoretically, author = "R. D. Moser and N. P. Malaya and H. Chang and P. S. Zandonade and P. Vedula and A. Bhattacharya and A. Haselbacher", title = "“Theoretically based optimal large-eddy simulation", journal = "” Phys. Fluids", volume = "21", pages = "105104--1", year = 2009 }`

- B.~S.~Kirk, “Adiabatic shock capturing in perfect gas hypersonic flows,” International journal for numerical methods in fluids, vol. 64, iss. 9, pp. 1041-1062, 2010.

[Bibtex]`@article{Kirk_2010b, author = {B.~S.~Kirk}, title = {{Adiabatic shock capturing in perfect gas hypersonic flows}}, journal = {International Journal for Numerical Methods in Fluids}, year = 2010, month = nov, volume = 64, number = 9, pages = {1041--1062}, note = {\url{http://dx.doi.org/10.1002/fld.2195}} }`

- B.~S.~Kirk and G.~F.~Carey, “Validation of Fully Implicit, Parallel Finite Element Simulations of Laminar Hypersonic Flows,” Aıaa journal, vol. 48, iss. 6, pp. 1025-1036, 2010.

[Bibtex]`@article{Kirk_2010a, author = {B.~S.~Kirk and G.~F.~Carey}, title = {{Validation of Fully Implicit, Parallel Finite Element Simulations of Laminar Hypersonic Flows}}, journal = {AIAA Journal}, year = 2010, month = jun, volume = 48, number = 6, pages = {1025--1036}, note = {\url{http://dx.doi.org/10.2514/1.40860}} }`

- B.~S.~Kirk, “Multidimensional Assessment of Modeling Error in Typical High-Speed Wind-Tunnel Heat-Transfer Data-Reduction Schemes,” Aıaa journal of thermophysics and heat transfer, vol. 23, iss. 1, pp. 186-191, 2009.

[Bibtex]`@article{Kirk_2009, author = {B.~S.~Kirk}, title = {{Multidimensional Assessment of Modeling Error in Typical High-Speed Wind-Tunnel Heat-Transfer Data-Reduction Schemes}}, journal = {AIAA Journal of Thermophysics and Heat Transfer}, year = 2009, month = jan, volume = 23, number = 1, pages = {186--191}, note = {\url{http://dx.doi.org/10.2514/1.35989}} }`

- T.~A.~Oliver, K. ~C. Estacio-Hiroms, N.~Malaya, and G.~F.~Carey, “Manufactured ſolutions for the favre-averaged navier-ſtokes equations with eddy-viscosity turbulence models,” in 50th aıaa aerospace ſciences meeting, 2012.

[Bibtex]`@inproceedings{AIAA_AeroSci_2012, author = {T.~A.~Oliver and K.~C. Estacio-Hiroms and N.~Malaya and G.~F.~Carey}, title = {Manufactured Solutions for the Favre-Averaged Navier-Stokes Equations with Eddy-Viscosity Turbulence Models}, booktitle = {50th AIAA Aerospace Sciences Meeting}, year = {2012}, note = {To appear}, }`

- T.~A.~Oliver and R.~D.~Moser, “Bayesian uncertainty quantification applied to RANS turbulence models,” J. phys.: conf. ſer., 2011.

[Bibtex]`@article{ETC13-2011, author = {T.~A.~Oliver and R.~D.~Moser}, title = {Bayesian uncertainty quantification applied to {RANS} turbulence models}, journal = {J. Phys.: Conf. Ser.}, year = {2011}, }`

- T.~A.~Oliver and R.~D.~Moser, “Accounting for uncertainty in the analysis of overlap layer mean velocity models,” Phys. fluids, 2011.

[Bibtex]`@article{POF-2011, author = {T.~A.~Oliver and R.~D.~Moser}, title = {Accounting for Uncertainty in the Analysis of Overlap Layer Mean Velocity Models}, journal = {Phys. Fluids}, year = {2011}, note = {Under review}, }`

- S.~H.~Cheung, T.~A.~Oliver, E.~E.~Prudencio, S.~Prudhomme, and R.~D.~Moser, “Bayesian uncertainty analysis with applications to turbulence modeling,” Reliab. eng. ſyst. ſaf., vol. 96, pp. 1137-1149, 2011.

[Bibtex]`@article{RESS-2010, author = {S.~H.~Cheung and T.~A.~Oliver and E.~E.~Prudencio and S.~Prudhomme and R.~D.~Moser}, title = {Bayesian Uncertainty Analysis with Applications to Turbulence Modeling}, journal = {Reliab. Eng. Syst. Saf.}, volume = {96}, issue = {9}, pages = {1137--1149}, year = {2011}, }`

- E. E. Prudencio and K. W. Schulz, “The parallel C++ statistical library QUESO: Quantification of Uncertainty for Estimation, Simulation and Optimization,” in Euro-par 2011 workshops, part ı, M. Alexander et al., Ed., Berlin Heidelberg: Springer-Verlag, 2012, vol. 7155, pp. 398-407.

[Bibtex]`@InCollection{PrSc2011, author = {E.E. Prudencio and K.W. Schulz}, title = {The parallel {C}++ statistical library {QUESO}: {Quantification of Uncertainty for Estimation, Simulation and Optimization}}, booktitle = {Euro-Par 2011 Workshops, Part I}, year = {2012}, publisher = {Springer-Verlag}, address = {Berlin Heidelberg}, series = {Lecture Notes in Computer Science}, editor = "M. {Alexander et al.}", volume = "7155", pages = "398--407" }`

- E. E. Prudencio and S. H. Cheung, “Parallel adaptive multilevel ſampling algorithms for the bayesian analysis of mathematical models,” International journal for uncertainty quantification, 2011, to appear.

[Bibtex]`@article{PrCh2011, author = {E. E. Prudencio and S. H. Cheung}, title = {Parallel Adaptive Multilevel Sampling Algorithms for the Bayesian Analysis of Mathematical Models}, journal = {International Journal for Uncertainty Quantification}, volume = "", number = "", pages = "", year = "2011, to appear", series = "", editor = "" }`

- T.~A.~Oliver and D.~L.~Darmofal, “Analysis of dual consistency for discontinuous galerkin discretization of ſource terms,” Sıam j. numer. anal., vol. 47, pp. 3507-3525, 2009.

[Bibtex]`@ARTICLE{SINUM-2009, author = {T.~A.~Oliver and D.~L.~Darmofal}, title = {Analysis of Dual Consistency for Discontinuous Galerkin Discretization of Source Terms}, journal = {SIAM J. Numer. Anal.}, year = {2009}, volume = {47}, issue = {5}, pages = {3507--3525}, }`

- T. A. Oliver and D. L. Darmofal, “Impact of turbulence model ırregularity on high-order discretizations,” in 47th aıaa aerospace ſciences meeting, 2009.

[Bibtex]`@inproceedings{AIAA_AeroSci_2009, author = "Todd A. Oliver and David L. Darmofal", title = "Impact of Turbulence Model Irregularity on High-Order Discretizations", booktitle = {47th AIAA Aerospace Sciences Meeting}, month = "January", year = 2009, note = {AIAA Paper 2009-953} }`

- R. R. Upadhyay, K. Miki, O. A. Ezekoye, and J. Marschall, “Uncertainty quantification of a graphite nitridation experiment using a bayesian approach,” Experimental thermal and fluid ſcience, vol. 35, iss. 8, pp. 1588-1599, 2011.

[Bibtex]`@article{Upadhyay20111588, title = "Uncertainty quantification of a graphite nitridation experiment using a Bayesian approach", journal = "Experimental Thermal and Fluid Science", volume = "35", number = "8", pages = "1588 - 1599", year = "2011", note = "", issn = "0894-1777", doi = "10.1016/j.expthermflusci.2011.07.010", url = "http://www.sciencedirect.com/science/article/pii/S0894177711001579", author = "R.R. Upadhyay and K. Miki and O.A. Ezekoye and J. Marschall", keywords = "Uncertainty quantification", keywords = "Parameter estimation", keywords = "Bayesian method", keywords = "Graphite nitridation experiment" }`

- R. Upadhyay and O. Ezekoye, “<span style="font-family:sans-serif">libmom</span>: a library for stochastic simulations in engineering using statistical moments,” Engineering with computers, pp. 1-12.

[Bibtex]`@article {springerlink:10.1007/s00366-011-0219-9, author = {Upadhyay, Rochan and Ezekoye, Ofodike}, affiliation = {Institute for Computational Engineering and Sciences, The University of Texas at Austin, 1 University Station C0200, Austin, TX 78712, USA}, title = {<span style="font-family:sans-serif">libMoM</span>: a library for stochastic simulations in engineering using statistical moments}, journal = {Engineering with Computers}, publisher = {Springer London}, issn = {0177-0667}, keyword = {Computer Science}, pages = {1-12}, url = {http://dx.doi.org/10.1007/s00366-011-0219-9}, note = {10.1007/s00366-011-0219-9}, }`

- R. R. and Upadhyay, “Evaluation of the use of the chebyshev algorithm with the quadrature method of moments for simulating aerosol dynamics,” Journal of aerosol ſcience, p. -, 2011.

[Bibtex]`@article{RochanR2011, title = "Evaluation of the use of the Chebyshev algorithm with the quadrature method of moments for simulating aerosol dynamics", journal = "Journal of Aerosol Science", volume = "", number = "0", pages = " - ", year = "2011", note = "", issn = "0021-8502", doi = "10.1016/j.jaerosci.2011.09.005", url = "http://www.sciencedirect.com/science/article/pii/S0021850211001613", author = "Rochan R. and Upadhyay", keywords = "Aerosol General Dynamic Equation", keywords = "Moments", keywords = "Quadrature Method of Moments", keywords = "Chebyshev Algorithm", keywords = "Product-Difference Algorithm" }`

- R. ~R. Upadhyay, P. ~T. Bauman, R. Stogner, K. ~W. Schulz, and O. ~A. Ezekoye, “Steady-ſtate ablation model coupling with hypersonic flow,” Aıaa paper 2010-1176, 2010.

[Bibtex]`@article{Upadhyay-2010-Ablation, author = {R.~R. Upadhyay and P.~T. Bauman and R. Stogner and K.~W. Schulz and O.~A. Ezekoye}, title = {Steady-State Ablation Model Coupling with Hypersonic Flow}, year = {2010}, journal = {AIAA Paper 2010-1176}, }`

- R. ~R. Upadhyay, “Description and Results of a Predictive Model for Pyrolysis,” , 2011.

[Bibtex]`@article{Upadhyay-2011-Ablation-Workshop, author = {R.~R. Upadhyay}, title = {Description and {R}esults of a {P}redictive {M}odel for {P}yrolysis}, year = {2011}, note = {Fourth {A}nnual {A}{F}{O}{S}{R}/{N}{A}{S}{A}/{S}{N}{L} {A}blator {M}odeling {W}orkshop, {A}lbuquerque, {N}ew {M}exico, {M}arch 2011}, }`

- A. R. ~A. andR.~R. Upadhyay, “Extension of the Pecos quasi-steady ablation toolkit for uncertainty propagation,” , 2011.

[Bibtex]`@article{Upadhyay-2011-Ablation-Workshop-Reed-Poster, author = {R.~A. Anzalone andR.~R. Upadhyay}, title = {Extension of the {P}ecos quasi-steady ablation toolkit for uncertainty propagation}, year = {2011}, note = {Fourth {A}nnual {A}{F}{O}{S}{R}/{N}{A}{S}{A}/{S}{N}{L} {A}blator {M}odeling {W}orkshop, {A}lbuquerque, {N}ew {M}exico, {M}arch 2011}, }`

- R. Ulerich and O. Schilling, “Comparisons of a Reynolds-Averaged Navier–Stokes Model with Self-Similar Solutions for Large Atwood Number Rayleigh–Taylor Mixing.” 2010.

[Bibtex]`@inproceedings{ulerich2010comparisons, abstract = {{A new high-order, multicomponent, weighted essentially nonoscillatory (WENO) implementation of a three- and four- equation Reynolds-averaged Navier-Stokes (RANS) model incorporating both mechanical and scalar turbulence is used to simulate intermediate-to-large Atwood number Rayleigh-Taylor turbulent mixing. The predicted RANS mixing layer evolution is compared with the analytical self-similar solutions of the transport equations. The terms in the transport equation budgets are compared in detail to their self-similar profiles across the mixing layer. Additionally, the sensitivity of the RANS solutions to variations in the initial conditions and in the model coefficients is explored. The implications of these results for advanced modeling of Rayleigh-Taylor turbulent mixing are discussed.}}, author = {Ulerich, R. and Schilling, O.}, citeulike-article-id = {9733339}, journal = {Bulletin of the American Physical Society}, posted-at = {2011-09-01 17:50:57}, priority = {2}, publisher = {APS Division of Fluid Dynamics}, title = {{Comparisons of a Reynolds-Averaged Navier--Stokes Model with Self-Similar Solutions for Large Atwood Number Rayleigh--Taylor Mixing}}, year = {2010} }`

- B. Kirk, R. Stogner, P. Bauman, and T. Oliver, “Modeling hypersonic entry with the Fully-Implicit Navier-Stokes (FIN-S) stabilized finite element flow solver,” Computers and fluids, vol. 92, pp. 281-292, 2014.

[Bibtex]`@article{FINSEntryPaper, author={Benjamin~S. Kirk and Roy~H. Stogner and Paul~T. Bauman and Todd~A. Oliver}, title={Modeling hypersonic entry with the {F}ully-{I}mplicit {N}avier-{S}tokes ({FIN-S}) stabilized finite element flow solver}, journal={Computers and Fluids}, volume={92}, pages={281--292}, year={2014} }`

- K. Schulz, R. Ulerich, N. Malaya, P. Bauman, R. Stogner, and C. Simmons, “Early experiences porting ſcientific applications to the Many Integrated Core (MIC) platform,” in TACC-Intel Highly Parallel Computing Symposium, {Austin, Texas}, 2012.

[Bibtex]`@inproceedings{Schulz2012Early, title={Early Experiences Porting Scientific Applications to the {M}any {I}ntegrated {C}ore ({MIC}) Platform}, author={Karl~W. Schulz and Rhys Ulerich and Nicholas Malaya and Paul~T. Bauman and Roy Stogner and Chris Simmons}, booktitle={{TACC-Intel Highly Parallel Computing Symposium}}, address={{Austin, Texas}}, month={{A}pril}, year={2012}, url={http://www.tacc.utexas.edu/documents/13601/aa8e98bc-3544-4136-81aa-3920ae882a65}, abstract={{ This paper presents experiences using an early development environment release of the forthcoming Intel MIC platform, focusing on porting of existing scientific applications and micro-kernels. Fortran and C++ applications are chosen from disciplines including quantum mechanics, hypersonics, rarefied gas dynamics, finite-element analysis, and FFT and linear algebra kernels used in the direct numerical simulation of turbulence. To characterize the porting efforts required for applications at different stages of development, codes considered include both serial applications (no previous threading), codes with high BLAS usage, and codes with prior shared memory parallelism. }} }`

- R. Stogner, P. Bauman, K. Schulz, R. Upadhyay, and A. Maurente, “Uncertainty and parameter ſensitivity in multiphysics reentry flows,” in 49th aıaa aerospace ſciences meeting, 2011.

[Bibtex]`@inproceedings{Stogner2011Uncertainty, author = {R. Stogner and P. Bauman and K. Schulz and R. Upadhyay and A. Maurente}, booktitle = {49th AIAA Aerospace Sciences Meeting}, howpublished = {AIAA-2011-764}, location = {Orlando, Florida}, month = Jan, title = {Uncertainty and Parameter Sensitivity in Multiphysics Reentry Flows}, year = {2011} }`

- P.~T.~Bauman and R.~Stogner, “GRINS: a multiphysics framework based on the libMesh finite element library,” Sıam journal of ſcientific computing.

[Bibtex]`@article{GRINSMultiphysics, author = {P.~T.~Bauman and R.~Stogner}, title = {{GRINS}: A Multiphysics Framework Based on the {libMesh} Finite Element Library}, journal = {SIAM Journal of Scientific Computing}, note = {submitted for publication} }`